CDS

Accession Number TCMCG066C18029
gbkey CDS
Protein Id XP_034595846.1
Location join(4314302..4314505,4315242..4315344,4315711..4315787,4315919..4316110,4316271..4316390,4316487..4316549,4316757..4316903,4317002..4317166,4317351..4317428,4317531..4317617,4318120..4318392,4318483..4318578,4318894..4318989,4319260..4319330,4319463..4319591,4319680..4319756,4319849..4319889,4319971..4320045,4320142..4320299,4320547..4320651,4320745..4320820,4320911..4320993,4321077..4321785)
Gene LOC117857334
GeneID 117857334
Organism Setaria viridis

Protein

Length 1074aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA633601
db_source XM_034739955.1
Definition 5'-3' exoribonuclease 3-like isoform X1 [Setaria viridis]

EGGNOG-MAPPER Annotation

COG_category AL
Description XRN 5'-3' exonuclease N-terminus
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K12619        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03008        [VIEW IN KEGG]
ko03018        [VIEW IN KEGG]
map03008        [VIEW IN KEGG]
map03018        [VIEW IN KEGG]
GOs GO:0000966        [VIEW IN EMBL-EBI]
GO:0000967        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004527        [VIEW IN EMBL-EBI]
GO:0004532        [VIEW IN EMBL-EBI]
GO:0004534        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008409        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010586        [VIEW IN EMBL-EBI]
GO:0010587        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016075        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016796        [VIEW IN EMBL-EBI]
GO:0016896        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034471        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0034661        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0043633        [VIEW IN EMBL-EBI]
GO:0043634        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0060147        [VIEW IN EMBL-EBI]
GO:0060149        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060968        [VIEW IN EMBL-EBI]
GO:0060969        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071025        [VIEW IN EMBL-EBI]
GO:0071027        [VIEW IN EMBL-EBI]
GO:0071029        [VIEW IN EMBL-EBI]
GO:0071035        [VIEW IN EMBL-EBI]
GO:0071046        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090503        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGTGTGCCGGCGTTCTACCGGTGGCTGGCCGAGAAGTACCCGATGGTGGTGGTGGACGTGGTGGAGGAGGAGGCTGTGGAGATCGAGGGCGTGAAGGTGCCCGTCGACACCTCTAAGCCCAATCCCAACGGCCTCGAGTTCGACAACCTCTACCTTGATATGAATGGTATCATACACCCCTGCTTCCACCCGGAGGACAGGCCCTCCCCAACAACATTTGGTGAGGTTTTCCAGTGCATGTTTGATTACATCGACAGACTGTTCGTCATGGTTCGCCCTCGGAGGCTTTTGTACATGGCCATCGATGGTGTGGCTCCTCGTGCTAAGATGAACCAGCAGCGCTCTAGACGATTCAGAGCTGCAAAAGATGCAGCGGATGCGGCTGCAGAAGAAGAACGGCTACGTGAAGAGTTTGAGAGGGAAGGCAGAAAACTTCCTCCAAAACAGCAATCACAAACATGTGATTCCAATGTTATTACTCCAGGGACTGAGTTTATGGCTGTTTTATCAGTTGCTTTGCAGTATTACATCCATCTCAGGTTGAATTATGATCCTGGATGGAAACAAATTAAAGTTATTTTGTCTGATGCCAATGTTCCTGGTGAAGGGGAACATAAAATTATGTCGTACATTCGTGGCCAACGGAATCTGTCTGGTTTTAAACCAAATACACGCCATTGCCTGTATGGCCTGGATGCAGATCTGATCATGTTAGCTTTAGCAACACATGAAGTACACTTCTCAATACTGAGAGAGGTAGTTTATACACCTGGACAGCAGGATAAATGCTTCTTGTGTGGTCAGGTGGGACATTTAGCAGCAAACTGTGAAGGAAAGGTGAAAAGAAAAGCTGGGGAGTTTGATGAGAAGGGTGATGCTATTGTTCCCAAGAAGCCTTATCAGTTCTTGAATATATGGACCCTTCGGGAGTACTTAGAATATGAGTTCAGAATGCCAAACCCACCCTTCCAAATTGATTTTGAACGCATTGTTGATGATTTCATCTTCATGTGCTTCTTTGTTGGCAACGATTTTCTTCCACATATGCCAACACTAGAGATCCGTGAGGGAGCTATTAATTTGCTAATGGCAGTATACAAGAAGGAATTTCCCTCAATGGGTGGCTATTTAACTGATTCTTGCACGCCTGATCTGGATAGAGTTGAACACTTCATTCAAGCAGTTGGTTCCTATGAGGATAAAATATTTCAGAAAAGAGCCCGTTTGCATCAGCGTCAAGCAGAAAGAATTAAACGAGAAAAGGCCCAAGCTAAGCGGGGTGATGATCTGGATCCTCATGTTAGGGACGATCTTATTGTACCTGTTCAACGTTTTCAAGGGTCTCGCCTGGCCTCTGGGGCTGTACCTGCACCATATGAGCAGAATGGATCTCACAAAGACAACAAAGAAATGAACAATCGAGCTCGGAAAGCTGCGCGAGTATCAACGTCAGGTTCCAGCATTGCTGCAGCCATAGTTGATGCTGAAAATGACCTTGAAGCCCAAGAACGTGACAACAAAGAAGAACTGAAGTCAATGCTTAAAGATGCACTTCGAGAGAAGTCAGATATTTTTAATTCTGAAAATCCAGAGGAGGATAAGGTGAAACTTGGAGAACCGGGATGGAGGGAAAGGTACTATGAAGAGAAATTTGGGGCAAGAACACCTGAACAGATTGAAGAAATACGGAGAGATGTCGTTCTCAAATACACTGAAGGTTTGTGTTGGGTAATGCACTACTATTACGAAGGGGTCTGCTCATGGCAATGGTTCTATCCTTATCACTATGCTCCGTTCGCTTCGGATTTGAGGGATTTGGGTCAACTTGATATTACATTTGAACTTGGGACACCGTTCAAACCTTTTGATCAGCTTATGGGGGTTTTCCCAGCTGCAAGTGCCCATGCACTGCCGCTACAGTATCGGCGACTGATGATGGATCCAAATTCACCAATAATTGACTTTTATCCTACTGATTTTGAAGTAGATATGAATGGGAAGAGATATTCTTGGCAAGGAATTGCAAAATTGCCCTTTATCGATGAAGCTCGCTTATTGGCTGAGATAAAAAAAGTTGAGCATACTTTGACGCCTGAAGAAGCAAGGAGAAACAGTGTCATGTTCGATATGCTTTTTGTGAATGGATCACACCCGCTTTCTCCATATATCTACTCTCTCAACAGCAAATTTGGACATCTGCCTGACAAAGAGAGAAATGAAATTAAAGAAAAGCTTGATCCTTCTGCTAGTGGAGGAATGAATGGCTACATAACTCTTTGCAGTGGGGATCCATGCCCTCCTATCTTTAGGTCTCCTGTGGATGGGCTGGAGGATATTATGGATAATCAAGTGATATGCTCGATCTACAAGCTTCCGGATCATCATAAGCACATAGCCCGGCCTCCAGCTGGTGTTATCATACCCAAGAAGACTGTTGAAGCTGGGGATCTGAAACCACCTCCAGTGCTGTGGCATGAAGACAGCGGCAGGAGGCCTCATGATAATAGCAACAGGCACAACCCACCAGGAGCCATATCAGGCCGCCAACTTGGAGAGGCAGCCCACCGACTAGTCATAAACAGCTTAAATGCTCATGGTAGGGGGCAACATAACGGCCCATCAATGCCATATCAAACTATAATGAATGGCATGCACCATTTGAATGTAGTTCACCCTATTGGCAATCAAGGGATGCCTCCACGAGTGGAGCAGTCTGCTGGACGTCCTGGTTGGAATGTGCCTAGGGATAGTGTTCCTGATGGTCAAATACCAGCTTATGCATCATCAGGATCAGGTCATTATCAGTATGACAGATCAGGGCAATATGAACAAGGTAACCGAGGAAGGCAACAAAATCACCCATATGCAAGAGATGGCTACCATGATGCAAGAGGCAGGGTTCCACCTGCATATGGATACCAGCAGACTGGTGGCAACATGTATTCATCACAGCCTGTTGCTCTGCCACCGGGTCCTGGACTGTATGGGCAACAACCCCCATCAGCGTATCCTGGGGTTCGTGGTGGAGGCTACCAGCCCCCTCCATATGGTGGAGCCCAACAGTGGCAGCAACAACCATATAGTTCATATGCTGGAAGAGGGCCTTATGGAGGCGGACCACCACCCACAAGGGCTGATTCACGATCACAGCAATCACAGAACCGTTACGGTGCTTTGGACAGAAGTTCCAACCGGAGACCTCCATCTGGATATGGCCGATAA
Protein:  
MGVPAFYRWLAEKYPMVVVDVVEEEAVEIEGVKVPVDTSKPNPNGLEFDNLYLDMNGIIHPCFHPEDRPSPTTFGEVFQCMFDYIDRLFVMVRPRRLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEREGRKLPPKQQSQTCDSNVITPGTEFMAVLSVALQYYIHLRLNYDPGWKQIKVILSDANVPGEGEHKIMSYIRGQRNLSGFKPNTRHCLYGLDADLIMLALATHEVHFSILREVVYTPGQQDKCFLCGQVGHLAANCEGKVKRKAGEFDEKGDAIVPKKPYQFLNIWTLREYLEYEFRMPNPPFQIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFPSMGGYLTDSCTPDLDRVEHFIQAVGSYEDKIFQKRARLHQRQAERIKREKAQAKRGDDLDPHVRDDLIVPVQRFQGSRLASGAVPAPYEQNGSHKDNKEMNNRARKAARVSTSGSSIAAAIVDAENDLEAQERDNKEELKSMLKDALREKSDIFNSENPEEDKVKLGEPGWRERYYEEKFGARTPEQIEEIRRDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLRDLGQLDITFELGTPFKPFDQLMGVFPAASAHALPLQYRRLMMDPNSPIIDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLAEIKKVEHTLTPEEARRNSVMFDMLFVNGSHPLSPYIYSLNSKFGHLPDKERNEIKEKLDPSASGGMNGYITLCSGDPCPPIFRSPVDGLEDIMDNQVICSIYKLPDHHKHIARPPAGVIIPKKTVEAGDLKPPPVLWHEDSGRRPHDNSNRHNPPGAISGRQLGEAAHRLVINSLNAHGRGQHNGPSMPYQTIMNGMHHLNVVHPIGNQGMPPRVEQSAGRPGWNVPRDSVPDGQIPAYASSGSGHYQYDRSGQYEQGNRGRQQNHPYARDGYHDARGRVPPAYGYQQTGGNMYSSQPVALPPGPGLYGQQPPSAYPGVRGGGYQPPPYGGAQQWQQQPYSSYAGRGPYGGGPPPTRADSRSQQSQNRYGALDRSSNRRPPSGYGR